STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2575PFAM: cytochrome c class I; KEGG: dia:Dtpsy_0985 cytochrome c class I. (108 aa)    
Predicted Functional Partners:
Tint_0216
PFAM: cytochrome c class I; KEGG: acr:Acry_2792 cytochrome c, class I.
  
  
 
0.908
Tint_3060
PFAM: cytochrome c class I; KEGG: rfr:Rfer_2468 cytochrome c, class I.
  
  
 
0.902
Tint_2574
KEGG: dia:Dtpsy_0986 hypothetical protein.
       0.513
Tint_0017
PFAM: cytochrome d1 heme region; KEGG: bph:Bphy_1486 YVTN beta-propeller repeat-containing protein.
  
  
 0.454
Tint_0970
KEGG: afr:AFE_3230 hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: phosphoesterase.
  
  
 0.441
Tint_1619
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mpt:Mpe_A2634 putative dioxygenase (alpha subunit) oxidoreductase protein.
  
     0.432
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.