STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2736KEGG: rfr:Rfer_3844 beta-lactamase-like. (351 aa)    
Predicted Functional Partners:
Tint_2735
KEGG: pol:Bpro_4192 MerR family transcriptional regulator; PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR.
       0.649
Tint_2737
PFAM: Patatin; KEGG: har:HEAR2478 hypothetical protein.
   
   0.646
corA-2
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.620
Tint_0962
PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_0069 class II aldolase/adducin-like.
  
   0.581
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.516
Tint_2728
PFAM: DSBA oxidoreductase; KEGG: app:CAP2UW1_4329 DsbA oxidoreductase.
 
    0.490
Tint_2734
PFAM: thioesterase superfamily protein; KEGG: pna:Pnap_0454 hypothetical protein.
  
    0.485
Tint_1582
PFAM: alpha/beta hydrolase fold; KEGG: lch:Lcho_1898 alpha/beta hydrolase fold.
  
     0.478
Tint_1368
KEGG: mpt:Mpe_A1577 putative hydrolase protein; manually curated; PFAM: alpha/beta hydrolase fold.
  
     0.420
Tint_1482
Ankyrin; KEGG: pol:Bpro_2515 ankyrin.
    
 
 0.409
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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