STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_2971PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: azo:azo0969 outer membrane protein. (644 aa)    
Predicted Functional Partners:
Tint_2972
PFAM: protein of unknown function DUF490; KEGG: tbd:Tbd_0834 putative signal peptide protein.
 
 
 0.994
Tint_1358
PFAM: Protein of unknown function DUF2069, membrane; KEGG: azo:azo3163 hypothetical protein.
 
     0.505
Tint_2970
KEGG: app:CAP2UW1_2346 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
       0.477
Tint_0520
PFAM: cytochrome c assembly protein; KEGG: ctt:CtCNB1_4077 cytochrome c assembly protein.
  
     0.443
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.