STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_3003KEGG: vap:Vapar_1234 phenylacetate-CoA oxygenase, PaaH subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B. (105 aa)    
Predicted Functional Partners:
Tint_3000
phenylacetate-CoA oxygenase/reductase, PaaK subunit; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin.
 
 
 0.999
Tint_3002
KEGG: vap:Vapar_1233 phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein.
 
 0.999
Tint_3004
KEGG: lch:Lcho_3574 phenylacetate-CoA oxygenase subunit PaaA; TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein.
 
 0.999
Tint_3001
KEGG: dac:Daci_0813 phenylacetate-CoA oxygenase, PaaJ subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59.
 
 
 0.998
Tint_3006
KEGG: lch:Lcho_2404 phenylacetic acid degradation protein PaaD; TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein.
 
 
 0.994
Tint_3008
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mpt:Mpe_A0984 short chain enoyl-CoA hydratase / enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.979
Tint_3005
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.976
Tint_2997
KEGG: vap:Vapar_1226 phenylacetic acid degradation protein PaaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase.
 
  
 0.944
Tint_3007
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: azo:azo0301 3-hydroxy-acyl-CoA dehydrogenase.
 
  
 0.797
Tint_2999
PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0992 putative transcriptional regulator of paa operon.
 
     0.716
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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