STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tint_3045PFAM: OsmC family protein; KEGG: dar:Daro_2635 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Tint_3048
PFAM: acriflavin resistance protein; KEGG: dae:Dtox_0522 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.775
Tint_3046
PFAM: outer membrane efflux protein; KEGG: ote:Oter_0921 outer membrane efflux protein.
       0.773
Tint_3047
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sru:SRU_1979 acriflavin resistance protein AcrE, putative; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.773
Tint_3049
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hna:Hneap_1221 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.695
Tint_3034
KEGG: app:CAP2UW1_2750 thiol-disulfide isomerase and thioredoxins family protein.
 
    0.648
Tint_3032
PFAM: permease; KEGG: cch:Cag_0398 hypothetical protein.
 
     0.631
Tint_3050
Lipid A 3-O-deacylase-related protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
       0.557
Tint_3042
KEGG: hna:Hneap_0999 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein.
       0.514
Tint_3041
KEGG: sun:SUN_1405 hypothetical protein.
       0.508
Tint_3043
KEGG: ppg:PputGB1_5185 hypothetical protein.
       0.508
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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