Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL55565.1 | trxA2 | PFREUD_00650 | PFREUD_00640 | Hypothetical protein; Signal peptid detected according to SignalP. 3 TM domains according to TMHMM. | Thioredoxin. | 0.936 |
| CBL56490.1 | nrdJ | PFREUD_09650 | PFREUD_13010 | 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0301 (AlgH) family. | Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.992 |
| CBL56490.1 | trxA2 | PFREUD_09650 | PFREUD_00640 | 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0301 (AlgH) family. | Thioredoxin. | 0.773 |
| ahpC | msrA | PFREUD_05410 | PFREUD_17100 | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.489 |
| ahpC | msrB | PFREUD_05410 | PFREUD_12520 | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | 0.481 |
| ahpC | rpoB | PFREUD_05410 | PFREUD_05600 | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.710 |
| ahpC | trxA2 | PFREUD_05410 | PFREUD_00640 | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Thioredoxin. | 0.984 |
| ahpC | trxB | PFREUD_05410 | PFREUD_24100 | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Thioredoxin reductase. | 0.922 |
| merA | trxA2 | PFREUD_02330 | PFREUD_00640 | Pyridine nucleotide-disulphide oxidoreductase; Hg + NADP+ + H+ <=> Hg2+ + NADPH. | Thioredoxin. | 0.727 |
| msrA | ahpC | PFREUD_17100 | PFREUD_05410 | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.489 |
| msrA | msrB | PFREUD_17100 | PFREUD_12520 | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | 0.998 |
| msrA | trxA2 | PFREUD_17100 | PFREUD_00640 | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Thioredoxin. | 0.979 |
| msrA | trxB | PFREUD_17100 | PFREUD_24100 | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Thioredoxin reductase. | 0.604 |
| msrB | ahpC | PFREUD_12520 | PFREUD_05410 | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.481 |
| msrB | msrA | PFREUD_12520 | PFREUD_17100 | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.998 |
| msrB | trxA2 | PFREUD_12520 | PFREUD_00640 | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | Thioredoxin. | 0.869 |
| msrB | trxB | PFREUD_12520 | PFREUD_24100 | L-methionine (S)-S-oxide reductase; L-methionine + thioredoxin disulfide + H(2)O <=> L-methionine (S)-S-oxide + thioredoxin # The reaction occurs in the opposite direction to that given above. Dithiothreitol can replace reduced thioredoxin. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. | Thioredoxin reductase. | 0.559 |
| nrdJ | CBL56490.1 | PFREUD_13010 | PFREUD_09650 | Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0301 (AlgH) family. | 0.992 |
| nrdJ | trxA2 | PFREUD_13010 | PFREUD_00640 | Vitamin B12-dependent ribonucleotide reductase (Ribonucleoside-diphosphate reductase NrdJ); Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Thioredoxin. | 0.866 |
| rpoB | ahpC | PFREUD_05600 | PFREUD_05410 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Alkyl hydroperoxide reductase C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.710 |
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