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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL55691.1Peptidase; Pfam domain. (41 aa)    
Predicted Functional Partners:
CBL55974.1
6 Protein of unknown function, without similarity to other proteins.
  
     0.736
dapE1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase; N-Succinyl-LL-2,6-diaminoheptanedioate + H2O <=> Succinate + LL-2,6-Diaminoheptanedioate.
  
     0.691
arsR5
Transcriptional regulator.
  
     0.626
CBL56229.1
Hypothetical membrane protein.
  
     0.599
CBL56201.1
NADPH:quinone reductase related Zn-dependent oxidoreductase.
  
    0.591
CBL55939.1
6 Protein of unknown function, without similarity to other proteins.
  
     0.484
CBL56230.1
Hypothetical membrane protein.
  
     0.448
CBL57913.1
Oxidoreductase.
  
    0.438
uvrA4
Excinuclease ATPase subunit UvrA.
  
     0.401
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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