STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC1Helix-turn-helix, AraC type. (299 aa)    
Predicted Functional Partners:
CBL55722.1
NAD-dependent epimerase/dehydratase; This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
 
     0.850
mar
MarR, Transcriptional regulators.
 
    0.842
rpoD
RNA polymerase, sigma-24 subunit, ECF subfamily RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.659
CBL56630.1
6 Protein of unknown function, without similarity to other proteins.
  
     0.654
CBL57397.1
GntR-family protein transcriptional regulator.
   
  
 0.632
int-4
Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family.
  
    0.613
int
Prophage LambdaBa04, site-specific recombinase, phage integrase family; Voir cd01189; Belongs to the 'phage' integrase family.
  
    0.516
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.510
CBL56263.1
Cell envelope-related transcriptional attenuator.
   
    0.478
lacZ
Beta-galactosidase (Lactase) LacZ; Lactose + H2O <=> alpha-D-Glucose + D-Galactose.
 
   
 0.463
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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