Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL55915.1 | CBL55916.1 | PFREUD_03820 | PFREUD_03830 | 6 Protein of unknown function, without similarity to other proteins. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.756 |
| CBL55915.1 | dnaX | PFREUD_03820 | PFREUD_20530 | 6 Protein of unknown function, without similarity to other proteins. | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | 0.924 |
| CBL55915.1 | nifJ1 | PFREUD_03820 | PFREUD_01840 | 6 Protein of unknown function, without similarity to other proteins. | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | 0.413 |
| CBL55915.1 | recR | PFREUD_03820 | PFREUD_03840 | 6 Protein of unknown function, without similarity to other proteins. | Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.744 |
| CBL55916.1 | CBL55915.1 | PFREUD_03830 | PFREUD_03820 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 6 Protein of unknown function, without similarity to other proteins. | 0.756 |
| CBL55916.1 | CBL56517.1 | PFREUD_03830 | PFREUD_09920 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.705 |
| CBL55916.1 | clpP2 | PFREUD_03830 | PFREUD_08250 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.771 |
| CBL55916.1 | dnaX | PFREUD_03830 | PFREUD_20530 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | 0.483 |
| CBL55916.1 | nifJ1 | PFREUD_03830 | PFREUD_01840 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | 0.418 |
| CBL55916.1 | nifJ2 | PFREUD_03830 | PFREUD_07070 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | 0.418 |
| CBL55916.1 | recR | PFREUD_03830 | PFREUD_03840 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.988 |
| CBL55916.1 | rimP | PFREUD_03830 | PFREUD_14670 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.439 |
| CBL56517.1 | CBL55916.1 | PFREUD_09920 | PFREUD_03830 | 5.2 Protein of unknown function similar to proteins from other organisms. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.705 |
| CBL56517.1 | clpP2 | PFREUD_09920 | PFREUD_08250 | 5.2 Protein of unknown function similar to proteins from other organisms. | ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.763 |
| CBL56517.1 | dnaX | PFREUD_09920 | PFREUD_20530 | 5.2 Protein of unknown function similar to proteins from other organisms. | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | 0.601 |
| clpP2 | CBL55916.1 | PFREUD_08250 | PFREUD_03830 | ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.771 |
| clpP2 | CBL56517.1 | PFREUD_08250 | PFREUD_09920 | ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp 2); Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.763 |
| dnaX | CBL55915.1 | PFREUD_20530 | PFREUD_03820 | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | 6 Protein of unknown function, without similarity to other proteins. | 0.924 |
| dnaX | CBL55916.1 | PFREUD_20530 | PFREUD_03830 | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.483 |
| dnaX | CBL56517.1 | PFREUD_20530 | PFREUD_09920 | DNA polymerase III, delta prime subunit; Deoxynucleoside triphosphate + DNA <=> Pyrophosphate + DNA. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.601 |
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