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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL55942.1Hypothetical protein; No signal peptide (signalP) and 2 TM domains. (269 aa)    
Predicted Functional Partners:
PPA0563
Conserved protein containing thioredoxin domain.
    
   0.515
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.466
CBL57922.1
5.2 Protein of unknown function similar to proteins from other organisms.
    
 
 0.438
CBL55796.1
6 Protein of unknown function, without similarity to other proteins.
   
   0.432
ftsK
DNA translocase FtsK; DNA motor protein, which is both required to move DNA out of the region of the septum during cell division and for the septum formation. Tracks DNA in an ATP-dependent manner by generating positive supercoils in front of it and negative supercoils behind it. Protein located at the septum.
   
   0.432
vpr
Subtilases are a family of serine proteases.
  
 
 0.421
CBL56637.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
 
 0.421
CBL56064.1
Metalloprotease (Peptidase family M13); In bacteria they may be used for digestion of milk. believed to be involved with milk protein cleavage.
  
    0.408
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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