STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL56035.1PRC-barrel. (132 aa)    
Predicted Functional Partners:
CBL56036.1
Membrane efflux protein MFS.
       0.468
CBL55594.1
TRNA processing ribonuclease BN.
 
    0.455
speE
6 Protein of unknown function, without similarity to other proteins.
 
     0.454
CBL55654.1
5.2 Protein of unknown function similar to proteins from other organisms.
   
    0.443
CBL57344.1
TrkA, potassium transporter.
  
     0.425
CBL56257.1
Hypothetical membrane protein.
  
    0.424
CBL56037.1
Membrane efflux protein MFS.
       0.412
whiP
Hypothetical transmembrane protein; Involved in cell division; Belongs to the CrgA family.
  
     0.405
CBL57584.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.405
CBL56175.1
Permease binding-protein component ABC transporter.
  
    0.402
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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