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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bopASolute binding protein of the ABC transport system. (572 aa)    
Predicted Functional Partners:
CBL56126.1
ABC transporter.
 
 0.996
oppC
ABC transporter, permease protein OppC.
 
 0.995
CBL56124.1
ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 
 0.993
CBL56528.1
ABC transporter permease protein.
 
 0.980
CBL56529.1
Permease protein of oligopeptide ABC transporter.
 
 0.979
CBL56530.1
ATP-binding ABC transporter protein.
 
 
 0.970
CBL56527.1
ABC transporter, substrate binding protein.
  
  
 
0.915
nifJ1
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin.
  
  
 0.782
nifJ2
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
  
    0.774
inlA
Polysaccharide deacetylase precursor (S-layer domain protein).
      
 0.671
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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