STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiO2ABC transporter, ATP-binding protein, cobalt. (538 aa)    
Predicted Functional Partners:
CBL56146.1
ABC transporter-associated permease.
 
 
 0.983
pf2694
ABC-type transporter, permease components.
   0.979
CBL56147.1
6 Protein of unknown function, without similarity to other proteins.
 
    0.948
cbiQ1
ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ).
 
 
 0.732
CBL56530.1
ATP-binding ABC transporter protein.
 
  
0.694
cbiQ2
Cobalt transport protein CbiQ.
  
 
 0.583
CBL56886.1
Cobalt permease.
  
 
 0.583
CBL56148.1
6 Protein of unknown function, without similarity to other proteins.
       0.504
CBL56126.1
ABC transporter.
  
  
 0.472
CBL56528.1
ABC transporter permease protein.
  
  
 0.472
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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