STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCBABC transporter, permease protein OpuCB. (213 aa)    
Predicted Functional Partners:
CBL56175.1
Permease binding-protein component ABC transporter.
 
 0.999
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein opuCA.
 0.995
proV
ABC-type glycine betaine transport, ATP-binding protein.
 0.981
CBL57145.1
ABC transporter glycine betaine ?.
 
 0.976
opuBB
Permease membrane component ABC transporter OpuBB.
 
    
0.861
groS1(groES1)
10 kDa chaperonin 1 (Protein Cpn10 1) (groES protein 1) (Heat shock 10 1); Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
  
    0.448
CBL56626.1
Binding-protein-dependent transport systems inner membrane component.
  
     0.448
CBL56171.1
5.2 Protein of unknown function similar to proteins from other organisms.
       0.438
CBL56170.1
Major facilitator superfamily MFS_1 precursor.
       0.400
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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