STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL56210.1Phospholipase D/Transphosphatidylase. (417 aa)    
Predicted Functional Partners:
cdsA
CTP + Phosphatidate <=> Pyrophosphate + CDP-diacylglycerol; Belongs to the CDS family.
      
 0.643
nifU1
Nitrogen-fixing NifU-like; The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation.
   
 
 0.638
pcrA
ATP-dependent DNA helicase.
       0.585
comEC
ComE operon protein 3.
   
 
 0.569
gmk
Guanylate kinase, Guanosine monophosphate kinase (GMP kinase); Essential for recycling GMP and indirectly, cGMP.
    
  0.546
CBL56837.1
Phosphatidylglycerophosphate synthase; CDP-diacylglycerol + sn-Glycerol 3-phosphate <=> CMP + Phosphatidylglycerophosphate; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.527
gltB
Glutamate synthase large subunit (Ferredoxin); 2 L-Glutamate + 2 Oxidized ferredoxin <=> L-Glutamine + 2-Oxoglutarate + 2 Reduced ferredoxin.
     
 0.437
CBL57672.1
Hypothetical fusion protein.
  
    0.418
CBL55652.1
Diacylglycerol kinase, catalytic region.
  
 
 0.402
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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