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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caiDEnoyl-CoA hydratase/carnithine racemase CaiD. (310 aa)    
Predicted Functional Partners:
mmgA
2 Acetyl-CoA <=> CoA + Acetoacetyl-CoA and Acetyl-CoA + Butanoyl-CoA <=> CoA + 3-Oxohexanoyl-CoA; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.999
caiA
Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase); Fatty acid metabolism and xenobiotic degradation.
 
 0.953
fad
Acyl-CoA dehydrogenase.
 
 0.931
rpmG
50S ribosomal protein L33 RpmG; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.897
rspI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.889
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
   0.888
rpmJ
6 Protein of unknown function, without similarity to other proteins; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.885
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.884
rplQ
50S ribosomal protein L17.
    
   0.884
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
 
 0.884
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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