STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL56267.1Glycosyltransferase. (1083 aa)    
Predicted Functional Partners:
CBL56268.1
5.2 Protein of unknown function similar to proteins from other organisms.
       0.837
CBL56043.1
Hypothetical membrane protein.
  
     0.720
CBL56545.1
Anti-sigma factor.
  
     0.717
CBL57218.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.702
CBL57464.1
6 Protein of unknown function, without similarity to other proteins.
  
     0.654
CBL56550.1
Hypothetical membrane protein.
  
     0.625
CBL57711.1
Hypothetical membrane protein.
  
     0.601
CBL56727.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.595
CBL57712.1
Hypothetical membrane protein.
  
     0.592
whiB1
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.581
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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