Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pf26525.2 Protein of unknown function similar to proteins from other organisms. (293 aa)    
Predicted Functional Partners:
CBL56333.1
Long-chain fatty-acid CoA ligase (AMP-binding enzyme) (long-chain-fatty-acid---CoA ligase); ATP + Hexadecanoic acid + CoA <=> AMP + Palmitoyl-CoA + Pyrophosphate / ATP + Long-chain carboxylate + CoA <=> AMP + Pyrophosphate + Acyl-CoA.
 
  
 0.873
CBL56545.1
Anti-sigma factor.
  
     0.733
CBL56727.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.725
CBL56043.1
Hypothetical membrane protein.
  
     0.720
leuB
(2R,3S)-3-Isopropylmalate + NAD+ <=> (2S)-2-Isopropyl-3-oxosuccinate + NADH + H+.
     
 0.713
CBL56766.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.712
CBL57102.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.709
CBL56040.1
Nuclease (RecB family).
  
     0.707
CBL57079.1
5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.703
CBL57306.1
Hypothetical membrane protein.
  
     0.698
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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