STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pocRPositive regulatory protein of pdu and cob operons. (397 aa)    
Predicted Functional Partners:
pduC
Glycerol dehydratase large subunit.
 
   
 0.890
pduB
Propanediol utilization protein PduB; Glycerol degradation.
 
   
 0.872
pduD
Propanediol utilization: dehydratase PduD.
 
   
 0.865
pduE
Propanediol utilization: dehydratase PduE; Glycerol degradation.
 
   
 0.852
pduO
Propanediol utilization protein PduO; Glycerol metabolism; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.825
DhaG
Glycerol dehydratase reactivation factor DhaG; Glycerol metabolism.
 
     0.793
pduP
CoA-dependent propionaldehyde dehydrogenase PduP; Glycerol metabolism.
 
   
 0.789
pdu
Ethanolamine utilization flavoprotein.
 
     0.785
pduG
Propanediol utilization diol dehydratase reactivation protein PduG; Glycerol degradation.
 
     0.782
adh1
Fe-dependent alcohol dehydrogenase.
     
 0.700
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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