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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adh1Fe-dependent alcohol dehydrogenase. (376 aa)    
Predicted Functional Partners:
pduP
CoA-dependent propionaldehyde dehydrogenase PduP; Glycerol metabolism.
 0.995
pduC
Glycerol dehydratase large subunit.
  
 
 0.916
pduD
Propanediol utilization: dehydratase PduD.
  
 
 0.913
pduE
Propanediol utilization: dehydratase PduE; Glycerol degradation.
  
 
 0.908
CBL57405.1
Zinc-containing alcohol dehydrogenase superfamily.
   
 
 0.861
nifJ1
Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin.
  
  
 0.845
nifJ2
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
  
  
 0.845
CBL56236.1
Zinc-binding dehydrogenase.
  
 
 0.770
pocR
Positive regulatory protein of pdu and cob operons.
     
 0.700
pflA
PflA, Pyruvate-formate lyase-activating enzyme; S-Adenosyl-L-methionine + Dihydroflavodoxin + [Formate C-acetyltransferase]-glycine <=> 5 prime-Deoxyadenosine + L-Methionine + Flavodoxin semiquinone + [Formate C-acetyltransferase]-glycin-2-yl radical.
  
  
 0.627
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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