Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL56153.1 | CBL56501.1 | PFREUD_06230 | PFREUD_09760 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 0.758 |
| CBL56153.1 | pnpA | PFREUD_06230 | PFREUD_14570 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.766 |
| CBL56153.1 | ppiA | PFREUD_06230 | PFREUD_15770 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.658 |
| CBL56153.1 | rplC | PFREUD_06230 | PFREUD_05710 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.963 |
| CBL56153.1 | rpsA | PFREUD_06230 | PFREUD_15330 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 30S ribosomal protein S1. | 0.787 |
| CBL56153.1 | rpsD | PFREUD_06230 | PFREUD_06060 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.948 |
| CBL56153.1 | rpsE | PFREUD_06230 | PFREUD_05880 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.959 |
| CBL56153.1 | rpsK | PFREUD_06230 | PFREUD_06050 | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.962 |
| CBL56501.1 | CBL56153.1 | PFREUD_09760 | PFREUD_06230 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | GTP phosphohydrolase (mRNA-translation-assisting); GTP + H2O <=> GDP + Orthophosphate. | 0.758 |
| CBL56501.1 | fusA | PFREUD_09760 | PFREUD_05640 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Elongation factor G (EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.758 |
| CBL56501.1 | nnrD | PFREUD_09760 | PFREUD_06300 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.868 |
| CBL56501.1 | pnpA | PFREUD_09760 | PFREUD_14570 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.872 |
| CBL56501.1 | ppiA | PFREUD_09760 | PFREUD_15770 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.886 |
| CBL56501.1 | rplC | PFREUD_09760 | PFREUD_05710 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.799 |
| CBL56501.1 | rpsA | PFREUD_09760 | PFREUD_15330 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1. | 0.805 |
| CBL56501.1 | rpsD | PFREUD_09760 | PFREUD_06060 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.822 |
| CBL56501.1 | rpsE | PFREUD_09760 | PFREUD_05880 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.795 |
| CBL56501.1 | rpsK | PFREUD_09760 | PFREUD_06050 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.780 |
| fusA | CBL56501.1 | PFREUD_05640 | PFREUD_09760 | Elongation factor G (EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 0.758 |
| fusA | pnpA | PFREUD_05640 | PFREUD_14570 | Elongation factor G (EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.766 |
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