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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL56547.1Sensory transduction histidine kinase. (502 aa)    
Predicted Functional Partners:
CBL57036.1
Two-component system response regulator.
 
   
 0.860
CBL56275.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.518
whiB2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.497
pduV
Propanediol utilization protein PduV; Glycerol metabolism; Belongs to the EutP/PduV family.
 
   
 0.487
pdU
Propanediol utilization protein PduU; Cobalamin-dependent degradation of ethanolamine.
 
     0.459
CBL56546.1
6 Protein of unknown function, without similarity to other proteins.
       0.459
ssb2
Single-stranded DNA-binding protein 2 (SSB 2) (Helix-destabilizing protein 2).
  
     0.443
whiB1
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.427
CBL56517.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.410
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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