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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFBranched-chain amino acid ABC transporter, ATP-binding protein; Highly similar to Swiss-Prot entry P0A192. (234 aa)    
Predicted Functional Partners:
braE
Branched-chain amino acid transport system permease protein; 31% identity with Swiss-Prot entry P30296 and P22729. Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane.
 
 0.999
braD
High-affinity branched-chain amino acid transport system permease protein; Annotated from similarity Swiss-Prot entry P21627. Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I); Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
livG
Branched-chain amino acid ABC transporter, ATP-binding protein; Highly similar with Swiss-Prot entries P0A194 and P0A958, COG.
 
 
0.996
braC
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Precursor] (LIVAT-BP).
 
 
 0.995
CBL56606.1
Transcriptional regulator; Contains C-terminal CBS domain.
 
    0.867
CBL55646.1
ABC transporter, permease protein.
 
      0.680
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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