Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL56162.1 | CBL57612.1 | PFREUD_06320 | PFREUD_21140 | 6 Protein of unknown function, without similarity to other proteins. | Helicase. | 0.734 |
| CBL56162.1 | hrpA2 | PFREUD_06320 | PFREUD_12920 | 6 Protein of unknown function, without similarity to other proteins. | ATP-dependent helicase HrpA. | 0.707 |
| CBL56162.1 | ppiA | PFREUD_06320 | PFREUD_15770 | 6 Protein of unknown function, without similarity to other proteins. | Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.892 |
| CBL56162.1 | rnd | PFREUD_06320 | PFREUD_12550 | 6 Protein of unknown function, without similarity to other proteins. | This is an endoribonuclease that cleaves double-stranded RNA molecules. | 0.661 |
| CBL56162.1 | rph | PFREUD_06320 | PFREUD_07590 | 6 Protein of unknown function, without similarity to other proteins. | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.662 |
| CBL56162.1 | rpsA | PFREUD_06320 | PFREUD_15330 | 6 Protein of unknown function, without similarity to other proteins. | 30S ribosomal protein S1. | 0.805 |
| CBL56162.1 | rpsD | PFREUD_06320 | PFREUD_06060 | 6 Protein of unknown function, without similarity to other proteins. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.822 |
| CBL56162.1 | rpsE | PFREUD_06320 | PFREUD_05880 | 6 Protein of unknown function, without similarity to other proteins. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.795 |
| CBL56162.1 | rpsK | PFREUD_06320 | PFREUD_06050 | 6 Protein of unknown function, without similarity to other proteins. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.780 |
| CBL56501.1 | CBL57612.1 | PFREUD_09760 | PFREUD_21140 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Helicase. | 0.734 |
| CBL56501.1 | hrpA2 | PFREUD_09760 | PFREUD_12920 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpA. | 0.707 |
| CBL56501.1 | ppiA | PFREUD_09760 | PFREUD_15770 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Probable peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.886 |
| CBL56501.1 | rnd | PFREUD_09760 | PFREUD_12550 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | This is an endoribonuclease that cleaves double-stranded RNA molecules. | 0.661 |
| CBL56501.1 | rph | PFREUD_09760 | PFREUD_07590 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Ribonuclease PH (RNase PH) (tRNA nucleotidyltransferase); Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.662 |
| CBL56501.1 | rpsA | PFREUD_09760 | PFREUD_15330 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1. | 0.805 |
| CBL56501.1 | rpsD | PFREUD_09760 | PFREUD_06060 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.822 |
| CBL56501.1 | rpsE | PFREUD_09760 | PFREUD_05880 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.795 |
| CBL56501.1 | rpsK | PFREUD_09760 | PFREUD_06050 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.780 |
| CBL57612.1 | CBL56162.1 | PFREUD_21140 | PFREUD_06320 | Helicase. | 6 Protein of unknown function, without similarity to other proteins. | 0.734 |
| CBL57612.1 | CBL56501.1 | PFREUD_21140 | PFREUD_09760 | Helicase. | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 0.734 |
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