Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL56660.1 | CBL56948.1 | PFREUD_11380 | PFREUD_14490 | Sun, tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Methylase; N6-adenine-specific methylase. | 0.460 |
| CBL56660.1 | rnc | PFREUD_11380 | PFREUD_14460 | Sun, tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.648 |
| CBL56660.1 | rnpA | PFREUD_11380 | PFREUD_24210 | Sun, tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.411 |
| CBL56946.1 | CBL56948.1 | PFREUD_14470 | PFREUD_14490 | 5.2 Protein of unknown function similar to proteins from other organisms. | Methylase; N6-adenine-specific methylase. | 0.636 |
| CBL56946.1 | CBL56949.1 | PFREUD_14470 | PFREUD_14500 | 5.2 Protein of unknown function similar to proteins from other organisms. | 6 Protein of unknown function, without similarity to other proteins. | 0.414 |
| CBL56946.1 | coaD | PFREUD_14470 | PFREUD_14480 | 5.2 Protein of unknown function similar to proteins from other organisms. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.636 |
| CBL56946.1 | mutM3 | PFREUD_14470 | PFREUD_14440 | 5.2 Protein of unknown function similar to proteins from other organisms. | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.609 |
| CBL56946.1 | rnc | PFREUD_14470 | PFREUD_14460 | 5.2 Protein of unknown function similar to proteins from other organisms. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.812 |
| CBL56948.1 | CBL56660.1 | PFREUD_14490 | PFREUD_11380 | Methylase; N6-adenine-specific methylase. | Sun, tRNA and rRNA cytosine-C5-methylases; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.460 |
| CBL56948.1 | CBL56946.1 | PFREUD_14490 | PFREUD_14470 | Methylase; N6-adenine-specific methylase. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.636 |
| CBL56948.1 | CBL56949.1 | PFREUD_14490 | PFREUD_14500 | Methylase; N6-adenine-specific methylase. | 6 Protein of unknown function, without similarity to other proteins. | 0.605 |
| CBL56948.1 | CBL57937.1 | PFREUD_14490 | PFREUD_24200 | Methylase; N6-adenine-specific methylase. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.666 |
| CBL56948.1 | coaD | PFREUD_14490 | PFREUD_14480 | Methylase; N6-adenine-specific methylase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.970 |
| CBL56948.1 | engA | PFREUD_14490 | PFREUD_11260 | Methylase; N6-adenine-specific methylase. | GTP binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.543 |
| CBL56948.1 | ftsY | PFREUD_14490 | PFREUD_14400 | Methylase; N6-adenine-specific methylase. | Signal recognition particle receptor; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.555 |
| CBL56948.1 | mutM3 | PFREUD_14490 | PFREUD_14440 | Methylase; N6-adenine-specific methylase. | Formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.442 |
| CBL56948.1 | rnc | PFREUD_14490 | PFREUD_14460 | Methylase; N6-adenine-specific methylase. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.468 |
| CBL56948.1 | rnpA | PFREUD_14490 | PFREUD_24210 | Methylase; N6-adenine-specific methylase. | Ribonuclease P protein component (RNaseP protein) (RNase P protein) (Protein C5); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.437 |
| CBL56949.1 | CBL56946.1 | PFREUD_14500 | PFREUD_14470 | 6 Protein of unknown function, without similarity to other proteins. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.414 |
| CBL56949.1 | CBL56948.1 | PFREUD_14500 | PFREUD_14490 | 6 Protein of unknown function, without similarity to other proteins. | Methylase; N6-adenine-specific methylase. | 0.605 |
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