Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL57136.1 | CBL57137.1 | PFREUD_16360 | PFREUD_16370 | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | Acetyltransferase. | 0.539 |
| CBL57136.1 | gpt | PFREUD_16360 | PFREUD_16380 | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | Putative purine phosphoribosyltransferase. | 0.416 |
| CBL57136.1 | int-20 | PFREUD_16360 | PFREUD_24740 | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | Integrase, catalytic region. | 0.419 |
| CBL57136.1 | pimH | PFREUD_16360 | PFREUD_16350 | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | 0.840 |
| CBL57136.1 | tnpA-22 | PFREUD_16360 | PFREUD_24750 | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | Transposase IS3/IS911. | 0.533 |
| CBL57137.1 | CBL57136.1 | PFREUD_16370 | PFREUD_16360 | Acetyltransferase. | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | 0.539 |
| CBL57137.1 | gpt | PFREUD_16370 | PFREUD_16380 | Acetyltransferase. | Putative purine phosphoribosyltransferase. | 0.878 |
| CBL57137.1 | pimH | PFREUD_16370 | PFREUD_16350 | Acetyltransferase. | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | 0.528 |
| gpt | CBL57136.1 | PFREUD_16380 | PFREUD_16360 | Putative purine phosphoribosyltransferase. | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | 0.416 |
| gpt | CBL57137.1 | PFREUD_16380 | PFREUD_16370 | Putative purine phosphoribosyltransferase. | Acetyltransferase. | 0.878 |
| gpt | pimH | PFREUD_16380 | PFREUD_16350 | Putative purine phosphoribosyltransferase. | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | 0.416 |
| int-20 | CBL57136.1 | PFREUD_24740 | PFREUD_16360 | Integrase, catalytic region. | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | 0.419 |
| int-20 | pimH | PFREUD_24740 | PFREUD_16350 | Integrase, catalytic region. | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | 0.419 |
| int-20 | tnpA-22 | PFREUD_24740 | PFREUD_24750 | Integrase, catalytic region. | Transposase IS3/IS911. | 0.592 |
| pimH | CBL57136.1 | PFREUD_16350 | PFREUD_16360 | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | 0.840 |
| pimH | CBL57137.1 | PFREUD_16350 | PFREUD_16370 | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | Acetyltransferase. | 0.528 |
| pimH | gpt | PFREUD_16350 | PFREUD_16380 | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | Putative purine phosphoribosyltransferase. | 0.416 |
| pimH | int-20 | PFREUD_16350 | PFREUD_24740 | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | Integrase, catalytic region. | 0.419 |
| pimH | tnpA-22 | PFREUD_16350 | PFREUD_24750 | Integral membrane efflux protein; Bacterial protein of unknown function (DUF894). This family consists of several bacterial proteins, many of which are annotated as putative transmembrane transport proteins. | Transposase IS3/IS911. | 0.533 |
| tnpA-22 | CBL57136.1 | PFREUD_24750 | PFREUD_16360 | Transposase IS3/IS911. | Regulatory protein, MarR; Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor MarR. A large number of compounds induce transcription of mar operon, due to the compound binding to MarR and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. | 0.533 |
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