STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL57145.1ABC transporter glycine betaine ?. (299 aa)    
Predicted Functional Partners:
opuBB
Permease membrane component ABC transporter OpuBB.
 
 0.993
proZ
PROZ-like protein (ABC-type glycine betaine transport, permease protein).
 
 0.992
proV
ABC-type glycine betaine transport, ATP-binding protein.
 
 0.986
proW
ABC-type glycine betaine transport protein.
 
 
 0.986
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein opuCA.
 
 0.985
opuCB
ABC transporter, permease protein OpuCB.
 
 0.976
CBL56175.1
Permease binding-protein component ABC transporter.
  
  
 
0.928
CBL57108.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
    0.729
PFREUD_22550
Hypothetical protein fragment; Signal peptide ?.
  
    0.729
CBL57146.1
5.2 Protein of unknown function similar to proteins from other organisms.
       0.655
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.