Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBL56276.1 | CBL57148.1 | PFREUD_07450 | PFREUD_16480 | Transmembrane transport protein. | Major facilitator superfamily. | 0.688 |
CBL57148.1 | CBL56276.1 | PFREUD_16480 | PFREUD_07450 | Major facilitator superfamily. | Transmembrane transport protein. | 0.688 |
CBL57148.1 | CBL57753.1 | PFREUD_16480 | PFREUD_22500 | Major facilitator superfamily. | Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site. | 0.407 |
CBL57148.1 | ubiG | PFREUD_16480 | PFREUD_16470 | Major facilitator superfamily. | S-adenosyl-L-methionine + 3-demethylubiquinone-9 <=> S-adenosyl-L-homocysteine + ubiquinone-9. | 0.443 |
CBL57753.1 | CBL57148.1 | PFREUD_22500 | PFREUD_16480 | Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site. | Major facilitator superfamily. | 0.407 |
ubiG | CBL57148.1 | PFREUD_16470 | PFREUD_16480 | S-adenosyl-L-methionine + 3-demethylubiquinone-9 <=> S-adenosyl-L-homocysteine + ubiquinone-9. | Major facilitator superfamily. | 0.443 |