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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marR3Transcriptional regulator, MarR family. (144 aa)    
Predicted Functional Partners:
CBL57279.1
Hypothetical protein; Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
     0.916
arsR5
Transcriptional regulator.
  
  
 0.776
CBL57276.1
Permease; Belongs to the major facilitator superfamily.
       0.570
tetR8
Regulatory protein, TetR.
  
    0.497
CBL55680.1
6 Protein of unknown function, without similarity to other proteins.
  
     0.473
CBL55543.1
Hypothetical transmembrane protein.
  
     0.470
CBL55553.1
Hypothetical transmembrane protein; Possible EPS polymerase.
  
     0.457
CBL57225.1
5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.426
CBL57822.1
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.400
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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