Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL57084.1 | nifU1 | PFREUD_15860 | PFREUD_14930 | HesB. may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which some also contain NifU-like domains pfam01106 which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli, the hesB-like gene iscN is required for nitrogen fixation; Belongs to the HesB/IscA family. | Nitrogen-fixing NifU-like; The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. | 0.825 |
| CBL57084.1 | nifU2 | PFREUD_15860 | PFREUD_19640 | HesB. may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions. Other members of this family include various hypothetical proteins of which some also contain NifU-like domains pfam01106 which is also involved in nitrogen fixation. In the gram-negative soil bacterium Rhizobium etli, the hesB-like gene iscN is required for nitrogen fixation; Belongs to the HesB/IscA family. | NifU-like protein. | 0.723 |
| feoA | feoB | PFREUD_19660 | PFREUD_19650 | Ferrous iron transport protein A; This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. | Fe2+ transport system protein B. Molecular function: GTP binding, iron ion binding. Cellular component: integral to membrane. | 0.962 |
| feoA | nifU2 | PFREUD_19660 | PFREUD_19640 | Ferrous iron transport protein A; This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. | NifU-like protein. | 0.691 |
| feoB | feoA | PFREUD_19650 | PFREUD_19660 | Fe2+ transport system protein B. Molecular function: GTP binding, iron ion binding. Cellular component: integral to membrane. | Ferrous iron transport protein A; This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese. | 0.962 |
| feoB | nifU2 | PFREUD_19650 | PFREUD_19640 | Fe2+ transport system protein B. Molecular function: GTP binding, iron ion binding. Cellular component: integral to membrane. | NifU-like protein. | 0.720 |
| ilvD | nifU2 | PFREUD_18990 | PFREUD_19640 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | NifU-like protein. | 0.651 |
| ilvD | nuoI | PFREUD_18990 | PFREUD_05240 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.626 |
| ilvD | sdhB | PFREUD_18990 | PFREUD_09260 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Succinate dehydrogenase, subunit B; # Succinate + FAD <=> FADH2 + Fumarate. | 0.510 |
| ilvD | sdhB3 | PFREUD_18990 | PFREUD_14300 | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | Succinate + acceptor <=> fumarate + reduced acceptor. | 0.510 |
| nifJ1 | nifJ2 | PFREUD_01840 | PFREUD_07070 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | 0.999 |
| nifJ1 | nifU1 | PFREUD_01840 | PFREUD_14930 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | Nitrogen-fixing NifU-like; The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. | 0.837 |
| nifJ1 | nifU2 | PFREUD_01840 | PFREUD_19640 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | NifU-like protein. | 0.737 |
| nifJ1 | nuoI | PFREUD_01840 | PFREUD_05240 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.996 |
| nifJ1 | sdhB | PFREUD_01840 | PFREUD_09260 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | Succinate dehydrogenase, subunit B; # Succinate + FAD <=> FADH2 + Fumarate. | 0.860 |
| nifJ1 | sdhB3 | PFREUD_01840 | PFREUD_14300 | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | Succinate + acceptor <=> fumarate + reduced acceptor. | 0.881 |
| nifJ2 | nifJ1 | PFREUD_07070 | PFREUD_01840 | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase, Pyruvate + CoA + oxidized flavodoxin = acetyl-CoA + CO2 + reduced flavodoxin. | 0.999 |
| nifJ2 | nifU1 | PFREUD_07070 | PFREUD_14930 | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | Nitrogen-fixing NifU-like; The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. | 0.618 |
| nifJ2 | nifU2 | PFREUD_07070 | PFREUD_19640 | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | NifU-like protein. | 0.516 |
| nifJ2 | nuoI | PFREUD_07070 | PFREUD_05240 | Pyruvate:ferredoxin (Flavodoxin) oxidoreductase. | NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.996 |
page 1 of 3