Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL56146.1 | CBL56888.1 | PFREUD_06160 | PFREUD_13710 | ABC transporter-associated permease. | ABC-type transporter, ATPase component. | 0.641 |
| CBL56146.1 | CBL56889.1 | PFREUD_06160 | PFREUD_13720 | ABC transporter-associated permease. | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | 0.921 |
| CBL56146.1 | cbiE | PFREUD_06160 | PFREUD_07700 | ABC transporter-associated permease. | Precorrin methylase (precorrin-3B C17-methyltransferase) CbiE/G/H fusion protein; S-Adenosyl-L-methionine + Precorrin 3B <=> S-Adenosyl-L-homocysteine + Precorrin 4 / Cobalt-precorrin 3 + S-Adenosyl-L-methionine <=> Cobalt-precorrin 4 + S-Adenosyl-L-homocysteine. | 0.829 |
| CBL56146.1 | cbiM | PFREUD_06160 | PFREUD_04590 | ABC transporter-associated permease. | Cobalt transport protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. | 0.740 |
| CBL56146.1 | cbiO1 | PFREUD_06160 | PFREUD_04560 | ABC transporter-associated permease. | Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. | 0.641 |
| CBL56146.1 | cbiO2 | PFREUD_06160 | PFREUD_06150 | ABC transporter-associated permease. | ABC transporter, ATP-binding protein, cobalt. | 0.983 |
| CBL56146.1 | cbiO3 | PFREUD_06160 | PFREUD_20190 | ABC transporter-associated permease. | ABC transporter, ATP-binding protein; Locus ABC transporter PF #2140, 2141 et 2475. | 0.641 |
| CBL56146.1 | cbiQ1 | PFREUD_06160 | PFREUD_20200 | ABC transporter-associated permease. | ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ). | 0.900 |
| CBL56888.1 | CBL56146.1 | PFREUD_13710 | PFREUD_06160 | ABC-type transporter, ATPase component. | ABC transporter-associated permease. | 0.641 |
| CBL56888.1 | CBL56889.1 | PFREUD_13710 | PFREUD_13720 | ABC-type transporter, ATPase component. | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | 0.995 |
| CBL56888.1 | cbiE | PFREUD_13710 | PFREUD_07700 | ABC-type transporter, ATPase component. | Precorrin methylase (precorrin-3B C17-methyltransferase) CbiE/G/H fusion protein; S-Adenosyl-L-methionine + Precorrin 3B <=> S-Adenosyl-L-homocysteine + Precorrin 4 / Cobalt-precorrin 3 + S-Adenosyl-L-methionine <=> Cobalt-precorrin 4 + S-Adenosyl-L-homocysteine. | 0.753 |
| CBL56888.1 | cbiM | PFREUD_13710 | PFREUD_04590 | ABC-type transporter, ATPase component. | Cobalt transport protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. | 0.576 |
| CBL56888.1 | cbiQ1 | PFREUD_13710 | PFREUD_20200 | ABC-type transporter, ATPase component. | ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ). | 0.656 |
| CBL56889.1 | CBL56146.1 | PFREUD_13720 | PFREUD_06160 | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | ABC transporter-associated permease. | 0.921 |
| CBL56889.1 | CBL56888.1 | PFREUD_13720 | PFREUD_13710 | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | ABC-type transporter, ATPase component. | 0.995 |
| CBL56889.1 | cbiO1 | PFREUD_13720 | PFREUD_04560 | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | Cobalt import ATP-binding protein CbiO; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. | 0.643 |
| CBL56889.1 | cbiO3 | PFREUD_13720 | PFREUD_20190 | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | ABC transporter, ATP-binding protein; Locus ABC transporter PF #2140, 2141 et 2475. | 0.643 |
| CBL56889.1 | cbiQ1 | PFREUD_13720 | PFREUD_20200 | BioY family protein. Membrane protein; BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is involved in this process, however the exact function of the protein is unknown. | ABC-type transporter, permease components (ABC-type cobalt transport system, permease component CbiQ). | 0.921 |
| CBL57511.1 | CBL57514.1 | PFREUD_20180 | PFREUD_20210 | ABC transporter. | Cobalt ABC transporter; Chorismate + NH3 <=> Anthranilate + Pyruvate + H2O. | 0.823 |
| CBL57511.1 | cbiO3 | PFREUD_20180 | PFREUD_20190 | ABC transporter. | ABC transporter, ATP-binding protein; Locus ABC transporter PF #2140, 2141 et 2475. | 0.938 |
page 1 of 3