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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBL57715.1Hypothetical membrane protein. (215 aa)    
Predicted Functional Partners:
CBL57711.1
Hypothetical membrane protein.
 
    0.967
CBL57714.1
5.2 Protein of unknown function similar to proteins from other organisms.
 
    0.967
CBL57712.1
Hypothetical membrane protein.
 
    0.966
CBL57713.1
Type II secretion system protein E.
 
    0.931
CBL57708.1
Hypothetical membrane protein.
 
    0.889
CBL57707.1
6 Protein of unknown function, without similarity to other proteins.
 
     0.858
hrdD1
Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.806
lspA
Extracted as s-layer proteins.
  
  
 0.783
CBL56725.1
6 Protein of unknown function, without similarity to other proteins.
 
     0.773
CBL56854.1
Hypothetical secreted protein.
 
     0.770
Your Current Organism:
Propionibacterium freudenreichii
NCBI taxonomy Id: 754252
Other names: P. freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii ATCC 9614, Propionibacterium freudenreichii subsp. shermanii CIP 103027, Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii str. CIRM-BIA1, Propionibacterium freudenreichii subsp. shermanii strain CIRM-BIA1
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