Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CBL56637.1 | araC1 | PFREUD_11150 | PFREUD_02080 | 5.2 Protein of unknown function similar to proteins from other organisms. | Helix-turn-helix, AraC type. | 0.421 |
| CBL56637.1 | int-7 | PFREUD_11150 | PFREUD_22630 | 5.2 Protein of unknown function similar to proteins from other organisms. | Phage integrase, N-terminal SAM-like. | 0.485 |
| CBL56637.1 | int-8 | PFREUD_11150 | PFREUD_22650 | 5.2 Protein of unknown function similar to proteins from other organisms. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.405 |
| apt | int-4 | PFREUD_11660 | PFREUD_11070 | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | 0.408 |
| apt | int-7 | PFREUD_11660 | PFREUD_22630 | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Phage integrase, N-terminal SAM-like. | 0.408 |
| apt | int-8 | PFREUD_11660 | PFREUD_22650 | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.408 |
| apt | prt | PFREUD_11660 | PFREUD_09670 | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage. Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. | 0.744 |
| apt | tyrA | PFREUD_11660 | PFREUD_11280 | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Prephenate + NAD+ <=> 3-(4-Hydroxyphenyl)pyruvate + CO2 + NADH + H+. | 0.752 |
| araC1 | CBL56637.1 | PFREUD_02080 | PFREUD_11150 | Helix-turn-helix, AraC type. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.421 |
| araC1 | int-4 | PFREUD_02080 | PFREUD_11070 | Helix-turn-helix, AraC type. | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | 0.613 |
| araC1 | int-8 | PFREUD_02080 | PFREUD_22650 | Helix-turn-helix, AraC type. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.463 |
| ftsK | int-8 | PFREUD_13210 | PFREUD_22650 | DNA translocase FtsK; DNA motor protein, which is both required to move DNA out of the region of the septum during cell division and for the septum formation. Tracks DNA in an ATP-dependent manner by generating positive supercoils in front of it and negative supercoils behind it. Protein located at the septum. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.542 |
| int-4 | apt | PFREUD_11070 | PFREUD_11660 | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.408 |
| int-4 | araC1 | PFREUD_11070 | PFREUD_02080 | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | Helix-turn-helix, AraC type. | 0.613 |
| int-4 | int-8 | PFREUD_11070 | PFREUD_22650 | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.665 |
| int-4 | prt | PFREUD_11070 | PFREUD_09670 | Phage integrase; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment; Belongs to the 'phage' integrase family. | Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage. Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. | 0.418 |
| int-7 | CBL56637.1 | PFREUD_22630 | PFREUD_11150 | Phage integrase, N-terminal SAM-like. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.485 |
| int-7 | apt | PFREUD_22630 | PFREUD_11660 | Phage integrase, N-terminal SAM-like. | Adenine phosphoribosyltransferase (AMP:diphosphate phospho-D-ribosyltransferase); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.408 |
| int-7 | int-8 | PFREUD_22630 | PFREUD_22650 | Phage integrase, N-terminal SAM-like. | Phage-related integrase (integrase); Belongs to the 'phage' integrase family. | 0.643 |
| int-7 | prt | PFREUD_22630 | PFREUD_09670 | Phage integrase, N-terminal SAM-like. | Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage. Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. | 0.418 |
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