STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WPG_1915hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family. (433 aa)    
Predicted Functional Partners:
WPG_1792
Mevalonate kinase.
 
 0.980
WPG_1914
Hypothetical protein.
 
 
 0.965
WPG_1791
Diphosphomevalonate decarboxylase.
 
  
 0.845
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
 
 0.698
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  
 0.683
WPG_0062
hydroxymethylglutaryl-CoA lyase.
    
  0.524
WPG_1916
Dipeptidyl peptidase IV.
       0.500
WPG_1917
Di-/tripeptide transporter.
       0.479
WPG_2455
Isopentenyl-diphosphate delta-isomerase.
  
  
 0.400
WPG_2778
Putative Nudix hydrolase YfcD.
  
  
 0.400
Your Current Organism:
Winogradskyella sp. PG2
NCBI taxonomy Id: 754409
Other names: W. sp. PG-2, Winogradskyella sp. PG-2
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