STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL06655.1Protein of unknown function DUF805. (68 aa)    
Predicted Functional Partners:
GAL08334.1
Chitinase.
   
    0.712
GAL02856.1
Branched-chain alpha-keto acid dehydrogenase.
    
  0.678
GAL02855.1
Branched-chain alpha-keto acid dehydrogenase E1 component beta subunit.
    
  0.676
GAL06504.1
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
    
  0.650
GAL05440.1
Dihydrolipoamide succinyltransferase component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
  0.650
GAL02852.1
Dihydrolipoamide acyltransferase component.
    
  0.650
GAL02853.1
Dihydrolipoamide acyltransferase component.
    
  0.650
GAL02854.1
Dihydrolipoamide acyltransferase component.
    
  0.650
GAL08228.1
Signal peptidase I; Belongs to the peptidase S26 family.
    
  0.626
GAL07189.1
Uncharacterized membrane protein.
  
 
  0.537
Your Current Organism:
Photobacterium aphoticum
NCBI taxonomy Id: 754436
Other names: CECT 7614, DSM 25995, KCTC 23057, P. aphoticum, Photobacterium aphoticum Lucena et al. 2011, Photobacterium sp. CECT 7614, Vibrio sp. JCM 19237, strain M46
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