STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL07234.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
GAL07233.1
Hypothetical protein.
       0.773
GAL07235.1
Putative methyltransferase Atu0936.
       0.768
GAL07236.1
Putative methyltransferase Atu0936.
       0.768
GAL07821.1
Ribosome-associated heat shock protein; Belongs to the HSP15 family.
  
    0.734
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. Belongs to the polypeptide deformylase family.
       0.671
GAL07237.1
Hypothetical protein.
       0.575
GAL07339.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.473
GAL06868.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.473
Your Current Organism:
Photobacterium aphoticum
NCBI taxonomy Id: 754436
Other names: CECT 7614, DSM 25995, KCTC 23057, P. aphoticum, Photobacterium aphoticum Lucena et al. 2011, Photobacterium sp. CECT 7614, Vibrio sp. JCM 19237, strain M46
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.