STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_1147PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family. (442 aa)    
Predicted Functional Partners:
Q7A_1146
ABC transporter; PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ATPase, LssB family.
 
 0.987
Q7A_1149
PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
 
 
 0.931
Q7A_1844
RTX toxin transporter; PFAM: ABC transporter; Peptidase C39 family; ABC transporter transmembrane region; TIGRFAM: type I secretion system ABC transporter, HlyB family.
 
 0.891
Q7A_375
PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
 
 
 0.882
Q7A_1145
Hypothetical protein.
 
     0.875
Q7A_1148
Two-component response regulator; PFAM: Bacterial regulatory proteins, luxR family.
 
    0.813
Q7A_2414
Putative hemagglutinin/hemolysin-like protein; TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass).
 
  
 0.793
Q7A_1933
PFAM: Bacterial protein of unknown function (DUF920).
 
  
 0.785
Q7A_1934
Hypothetical protein; PFAM: EAL domain; HAMP domain; GGDEF domain.
 
  
 0.726
Q7A_1847
Alkaline phosphatase; PFAM: Hemolysin-type calcium-binding repeat (2 copies); Haemolysin-type calcium binding protein related domain; Putative Ig domain.
 
  
 0.716
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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