STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_1545Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (331 aa)    
Predicted Functional Partners:
Q7A_1548
Type IV fimbrial assembly, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
 
 0.797
Q7A_1546
Hypothetical protein.
       0.788
Q7A_1547
Hypothetical protein.
       0.773
Q7A_1543
Hypothetical protein.
       0.762
Q7A_1544
Hypothetical protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
      
0.762
Q7A_1549
General secretion pathway protein F/ Type IV fimbrial assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.699
Q7A_2971
The metallo-beta-lactamase-like hydrolase; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.582
Q7A_1551
General secretion pathway protein D; PFAM: Protein of unknown function (DUF3438); Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.535
Q7A_1552
Hypothetical protein.
       0.500
Q7A_1550
Hypothetical protein.
       0.486
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.