STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_1924PFAM: Aminopeptidase I zinc metalloprotease (M18). (457 aa)    
Predicted Functional Partners:
Q7A_1925
Hypothetical protein.
       0.709
Q7A_1926
Hypothetical protein.
       0.668
Q7A_2497
Putative sugar phosphatase of HAD superfamily; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily subfamily IIA hydrolase, TIGR01457; phosphoglycolate/pyridoxal phosphate phosphatase family; Haloacid Dehalogenase Superfamily Class (subfamily) IIA; Belongs to the HAD-like hydrolase superfamily.
 
      0.610
cysS
PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.566
Q7A_1927
Putative methyltransferase.
  
    0.555
Q7A_1922
PFAM: Uncharacterised protein family (UPF0153); Belongs to the UPF0260 family.
       0.401
Q7A_1923
Hypothetical protein.
       0.401
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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