STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_2204Dipeptide-binding ABC transporter, periplasmic substrate-binding component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle. (720 aa)    
Predicted Functional Partners:
Q7A_2181
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.901
Q7A_2094
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.882
Q7A_2093
Dipeptide transport ATP-binding protein DppF; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
    0.735
Q7A_2125
PFAM: Binding-protein-dependent transport system inner membrane component.
  
 
 0.574
Q7A_2205
Enoyl-(acyl-carrier-protein) reductase (NADH); PFAM: short chain dehydrogenase.
       0.565
Q7A_2124
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.554
Q7A_2203
Flagellar motor rotation protein MotA; PFAM: MotA/TolQ/ExbB proton channel family.
       0.543
Q7A_2123
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.
 
    0.507
Q7A_2202
Flagellar motor rotation protein MotB; PFAM: OmpA family; TIGRFAM: type VI secretion system OmpA/MotB family protein.
       0.500
Q7A_2723
PFAM: Outer membrane efflux protein.
  
     0.465
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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