STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_2208PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain. (461 aa)    
Predicted Functional Partners:
Q7A_2207
Hypothetical protein.
 
 
 0.964
Q7A_3054
Putative transcriptional regulator.
 
 
 0.847
Q7A_1857
Hypothetical protein.
   
 
 0.599
Q7A_352
Putative transcriptional regulator.
   
 
 0.599
Q7A_3052
Hypothetical protein.
 
     0.583
Q7A_3053
Putative ATPase (AAA+ superfamily).
  
     0.528
Q7A_3045
Putative helicase; PFAM: Eukaryotic and archaeal DNA primase small subunit; Type III restriction enzyme, res subunit.
 
     0.433
Q7A_2206
Proton/glutamate symport protein @ Sodium/glutamate symport protein; PFAM: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.420
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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