STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_2459Carbamoyltransferase in large core OS assembly cluster; PFAM: Carbamoyltransferase. (574 aa)    
Predicted Functional Partners:
Q7A_2456
Glycosyl transferase in large core OS assembly cluster; PFAM: Glycosyl transferases group 1.
     0.812
Q7A_2462
Serine/threonine protein kinase; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
 
     0.786
Q7A_2463
Lipopolysaccharide core biosynthesis protein WaaP, heptosyl-I-kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
     0.767
Q7A_2458
Hypothetical protein.
 
     0.741
Q7A_2461
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG; PFAM: Glycosyl transferases group 1.
 
     0.738
Q7A_768
Hypothetical protein; PFAM: SdiA-regulated.
  
     0.697
WaaC
PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase I.
 
   
 0.655
Q7A_1952
PFAM: Methyltransferase domain.
  
     0.651
WaaF
PFAM: Glycosyltransferase family 9 (heptosyltransferase); TIGRFAM: lipopolysaccharide heptosyltransferase II.
 
    0.528
Q7A_1985
PFAM: Thermostable hemolysin.
  
     0.477
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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