STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_2718PFAM: Pyridoxamine 5'-phosphate oxidase. (170 aa)    
Predicted Functional Partners:
Q7A_2719
PFAM: Radical SAM superfamily.
       0.774
Q7A_2720
Hypothetical protein.
       0.568
Q7A_2717
Hypothetical protein.
       0.487
Q7A_214
PFAM: Protein of unknown function (DUF1348).
 
     0.447
Q7A_2588
PFAM: Isochorismatase family.
  
     0.444
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.