STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_320PFAM: Protein of unknown function (DUF556). (170 aa)    
Predicted Functional Partners:
Q7A_53
Delta 1-pyrroline-5-carboxylate synthetase; PFAM: Amino acid kinase family.
   
 0.925
Q7A_318
Dihydropteroate synthase-like protein; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase-related protein.
 
   
 0.885
Q7A_319
PFAM: Protein of unknown function (DUF447).
 
     0.883
Q7A_317
PFAM: Flavoprotein.
 
     0.879
Q7A_51
TIGRFAM: probable H4MPT-linked C1 transfer pathway protein.
 
   
 0.818
Q7A_48
PFAM: Histidine biosynthesis protein; TIGRFAM: hisA/hisF family protein; Belongs to the HisA/HisF family.
 
   
 0.811
Q7A_50
ATP-utilizing enzyme; PFAM: ATP-grasp domain.
 
   
 0.806
Q7A_46
Triphosphoribosyl-dephospho-CoA synthetase; PFAM: ATP:dephospho-CoA triphosphoribosyl transferase.
 
     0.794
Q7A_287
TIGRFAM: formylmethanofuran dehydrogenase subunit B.
 
     0.793
Q7A_284
PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C.
 
     0.791
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.