Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Q7A_320PFAM: Protein of unknown function (DUF556). (170 aa)    
Predicted Functional Partners:
Q7A_53
Delta 1-pyrroline-5-carboxylate synthetase; PFAM: Amino acid kinase family.
   
 0.917
Q7A_319
PFAM: Protein of unknown function (DUF447).
 
     0.893
Q7A_318
Dihydropteroate synthase-like protein; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase-related protein.
 
     0.890
Q7A_317
PFAM: Flavoprotein.
 
     0.882
Q7A_287
TIGRFAM: formylmethanofuran dehydrogenase subunit B.
 
   
 0.797
Q7A_46
Triphosphoribosyl-dephospho-CoA synthetase; PFAM: ATP:dephospho-CoA triphosphoribosyl transferase.
 
     0.792
Q7A_284
PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C.
 
     0.791
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.791
mch
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.791
Q7A_51
TIGRFAM: probable H4MPT-linked C1 transfer pathway protein.
 
   
 0.791
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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