STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7A_935Transcriptional regulator; PFAM: Ribbon-helix-helix protein, copG family. (90 aa)    
Predicted Functional Partners:
Q7A_936
PFAM: Plasmid stabilisation system protein.
  
 
 0.941
Q7A_2752
ParE toxin protein; PFAM: Plasmid stabilisation system protein.
  
 
 0.838
Q7A_1900
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
  
     0.685
Q7A_2745
PilT protein domain protein; PFAM: PIN domain.
   
   0.664
Q7A_934
PFAM: Methyltransferase domain.
       0.506
Q7A_3074
Transporter; PFAM: Protein of unknown function (DUF1228); Major Facilitator Superfamily.
  
     0.489
Q7A_933
Hypothetical protein.
       0.455
Q7A_1957
Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
     0.436
Q7A_2251
Ribosomal large subunit pseudouridine synthase D; PFAM: RNA pseudouridylate synthase.
  
     0.406
Your Current Organism:
Methylophaga nitratireducenticrescens
NCBI taxonomy Id: 754476
Other names: ATCC BAA-2433, DSM 25689, M. nitratireducenticrescens, Methylophaga nitratireducenticrescens Villeneuve et al. 2013, Methylophaga sp. GP59, Methylophaga sp. JAM1, strain JAM1
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