Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Q7C_2000PFAM: Protein of unknown function (DUF556). (228 aa)    
Predicted Functional Partners:
Q7C_1998
Dihydropteroate synthase-like protein; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase-related protein.
 
     0.959
Q7C_1999
PFAM: Protein of unknown function (DUF447).
 
     0.959
Q7C_1997
PFAM: Flavoprotein.
 
     0.953
Q7C_1780
Delta 1-pyrroline-5-carboxylate synthetase; PFAM: Amino acid kinase family.
 
   
 0.798
Q7C_1965
TIGRFAM: formylmethanofuran dehydrogenase subunit B.
 
   
 0.793
Q7C_1774
Triphosphoribosyl-dephospho-CoA synthetase; PFAM: ATP:dephospho-CoA triphosphoribosyl transferase.
 
     0.791
mch
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.790
Q7C_1962
PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C.
 
     0.790
ffsA
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.790
Q7C_1776
PFAM: Histidine biosynthesis protein; TIGRFAM: hisA/hisF family protein; Belongs to the HisA/HisF family.
 
     0.789
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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