Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Q7C_2116MxaL protein, putative. (324 aa)    
Predicted Functional Partners:
Q7C_2120
Hypothetical protein.
 
    0.935
Q7C_2117
MxaK protein, putative.
 
     0.933
Q7C_2119
MxaA protein.
 
     0.931
Q7C_2118
MxaC, protein involved in Ca2+ insertion into methanol dehydrogenase; PFAM: von Willebrand factor type A domain.
 
     0.930
Q7C_2122
Methanol dehydrogenase, small subunit; Catalyzes the oxidation of primary alcohols including methanol.
 
     0.896
Q7C_2121
PFAM: ATPase family associated with various cellular activities (AAA).
 
    0.873
Q7C_2123
PFAM: Cytochrome c; TIGRFAM: cytochrome c(L), periplasmic.
 
     0.862
Q7C_1775
PFAM: Formaldehyde-activating enzyme (Fae); TIGRFAM: formaldehyde-activating enzyme.
  
  
  0.846
Q7C_2124
PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: methanol oxidation system protein MoxJ.
 
     0.846
Q7C_2130
MxaD protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
     0.845
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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