STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q7C_586PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family. (77 aa)    
Predicted Functional Partners:
Q7C_1414
Molybdopterin biosynthesis MoeB protein; PFAM: SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
  
  0.973
Q7C_311
Cysteine desulfurase; PFAM: Aminotransferase class-V.
   
 0.970
Q7C_587
PFAM: tRNA methyl transferase.
 
   
 0.887
Q7C_588
TldD protein, part of proposed TldE/TldD proteolytic complex; PFAM: Putative modulator of DNA gyrase; PMID 12029038.
       0.773
Q7C_1415
NADH dehydrogenase.
 
  
 0.744
Q7C_591
PFAM: Maf-like protein; TIGRFAM: MAF protein; Belongs to the Maf family.
       0.646
Q7C_589
TIGRFAM: TIGR02099 family protein.
       0.636
Q7C_590
Cytoplasmic axial filament protein CafA and Ribonuclease G; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
       0.636
Q7C_585
PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.
       0.502
rlmH
LSU m3Psi1915 methyltransferase RlmH / ybeA; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.436
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.