Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Q7C_647Transglutaminase-like enzyme, putative cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488). (675 aa)    
Predicted Functional Partners:
Q7C_646
PFAM: Protein of unknown function DUF58.
  
 0.983
Q7C_645
PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.944
Q7C_1938
Hypothetical protein; PFAM: LysM domain.
  
     0.733
Q7C_1786
PFAM: Pilus assembly protein, PilP.
  
     0.717
Q7C_2325
Type IV fimbrial biogenesis protein FimT; PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein H.
 
     0.696
Q7C_1787
PFAM: Pilus assembly protein, PilO.
  
     0.695
Q7C_2689
Type IV pilus biogenesis protein PilZ; PFAM: PilZ domain.
 
     0.685
Q7C_1789
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
     0.675
Q7C_1788
Type IV pilus biogenesis protein PilN; PFAM: Fimbrial assembly protein (PilN).
  
     0.665
Q7C_2324
Type IV fimbrial biogenesis protein PilV; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain.
  
     0.638
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.