STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB68227.1KEGG: shn:Shewana3_3435 2.7e-23 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
KXB68410.1
KEGG: apb:SAR116_0070 2.1e-07 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 8.96; Belongs to the LysR transcriptional regulatory family.
  
     0.701
KXB68223.1
MaoC-like protein; KEGG: reh:H16_B0359 1.2e-24 acyl dehydratase K01726; Psort location: Cytoplasmic, score: 8.96.
 
     0.503
purD
KEGG: faa:HMPREF0389_00494 0. phosphoribosylformylglycinamidine synthase; K01952 phosphoribosylformylglycinamidine synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the GARS family.
     
 0.473
KXB68226.1
Citrate transporter; KEGG: pfe:PSF113_3272 1.4e-60 D-beta-hydroxybutyrate permease; Psort location: CytoplasmicMembrane, score: 10.00.
       0.466
KXB68224.1
KEGG: tte:TTE0544 2.9e-58 CaiD; 3-hydroxybutyryl-CoA dehydratase K01715; Psort location: Cytoplasmic, score: 9.97; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.433
KXB68225.1
CoA transferase; KEGG: aoe:Clos_0086 2.4e-134 coenzyme A transferase; K01026 propionate CoA-transferase; Psort location: Cytoplasmic, score: 8.96; Belongs to the 3-oxoacid CoA-transferase family.
       0.421
potA
Putative spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.401
Your Current Organism:
Peptoniphilus coxii
NCBI taxonomy Id: 755172
Other names: ATCC BAA-2106, CCUG 59622, JCM 16892, P. coxii, Peptoniphilus coxii Citron et al. 2013, Peptoniphilus sp. RMA 16757, strain RMA 16757
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